WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M88.5b.1 Sequence Name  M88.5b.1
Length (nt)  2243   Chromosome Location  III: 4555653-4559744
Chromosome . Primary Identifier  III Chromosome Location . Start  4555653
Chromosome Location . End  4559744 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M88.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010908 imph-1 M88.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M88.5b M88.5b 2115   III: 4555781-4555807

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M88.5b.1 4555653 4559744 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86119   155   III: 4555653-4555807 Caenorhabditis elegans
Exon86122   366   III: 4556146-4556511 Caenorhabditis elegans
Exon86130   156   III: 4556853-4557008 Caenorhabditis elegans
Exon86134   263   III: 4557101-4557363 Caenorhabditis elegans
Exon86140   123   III: 4557415-4557537 Caenorhabditis elegans
Exon86148   169   III: 4557584-4557752 Caenorhabditis elegans
Exon86152   105   III: 4557797-4557901 Caenorhabditis elegans
Exon86158   312   III: 4557980-4558291 Caenorhabditis elegans
Exon86162   304   III: 4558612-4558915 Caenorhabditis elegans
Exon86168   183   III: 4559400-4559582 Caenorhabditis elegans
Exon86175   107   III: 4559638-4559744 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M88.5b.1 4555653 4559744 1

1 Sequence

Length
2243

1 Sequence Ontology Term

Identifier Name Description
transcript