WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M88.5d.1 Sequence Name  M88.5d.1
Length (nt)  3005   Chromosome Location  III: 4555654-4560429
Chromosome . Primary Identifier  III Chromosome Location . Start  4555654
Chromosome Location . End  4560429 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M88.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010908 imph-1 M88.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M88.5d M88.5d 2193   III: 4555781-4555807

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M88.5d.1 4555654 4560429 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86120   154   III: 4555654-4555807 Caenorhabditis elegans
Exon86124   366   III: 4556146-4556511 Caenorhabditis elegans
Exon86132   156   III: 4556853-4557008 Caenorhabditis elegans
Exon86136   263   III: 4557101-4557363 Caenorhabditis elegans
Exon86142   123   III: 4557415-4557537 Caenorhabditis elegans
Exon86150   169   III: 4557584-4557752 Caenorhabditis elegans
Exon86156   495   III: 4557797-4558291 Caenorhabditis elegans
Exon86164   304   III: 4558612-4558915 Caenorhabditis elegans
Exon86170   183   III: 4559400-4559582 Caenorhabditis elegans
Exon86176   792   III: 4559638-4560429 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M88.5d.1 4555654 4560429 1

1 Sequence

Length
3005

1 Sequence Ontology Term

Identifier Name Description
transcript