WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04A8.16.1 Sequence Name  T04A8.16.1
Length (nt)  2551   Chromosome Location  III: 4700325-4704025
Chromosome . Primary Identifier  III Chromosome Location . Start  4700325
Chromosome Location . End  4704025 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04A8.16.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000543 clp-2 T04A8.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04A8.16 T04A8.16 2418   III: 4700449-4700523

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04A8.16.1 4700325 4704025 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86615   199   III: 4700325-4700523 Caenorhabditis elegans
Exon86616   232   III: 4700613-4700844 Caenorhabditis elegans
Exon86617   238   III: 4701016-4701253 Caenorhabditis elegans
Exon86618   454   III: 4701315-4701768 Caenorhabditis elegans
Exon86619   225   III: 4702266-4702490 Caenorhabditis elegans
Exon86620   241   III: 4702540-4702780 Caenorhabditis elegans
Exon86621   161   III: 4702830-4702990 Caenorhabditis elegans
Exon86622   281   III: 4703038-4703318 Caenorhabditis elegans
Exon86623   283   III: 4703366-4703648 Caenorhabditis elegans
Exon86624   165   III: 4703695-4703859 Caenorhabditis elegans
Exon86625   72   III: 4703954-4704025 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04A8.16.1 4700325 4704025 -1

1 Sequence

Length
2551

1 Sequence Ontology Term

Identifier Name Description
transcript