WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R144.7b.1 Sequence Name  R144.7b.1
Length (nt)  4633   Chromosome Location  III: 5008925-5017650
Chromosome . Primary Identifier  III Chromosome Location . Start  5008925
Chromosome Location . End  5017650 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R144.7b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020097 larp-1 R144.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R144.7b R144.7b 3453   III: 5010105-5010131

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R144.7b.1 5008925 5017650 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon87593   1207   III: 5008925-5010131 Caenorhabditis elegans
Exon87597   82   III: 5010181-5010262 Caenorhabditis elegans
Exon87599   159   III: 5010308-5010466 Caenorhabditis elegans
Exon87601   446   III: 5010544-5010989 Caenorhabditis elegans
Exon87602   177   III: 5011140-5011316 Caenorhabditis elegans
Exon87604   199   III: 5011473-5011671 Caenorhabditis elegans
Exon87606   603   III: 5011724-5012326 Caenorhabditis elegans
Exon87608   572   III: 5012456-5013027 Caenorhabditis elegans
Exon87610   193   III: 5013081-5013273 Caenorhabditis elegans
Exon87611   51   III: 5014969-5015019 Caenorhabditis elegans
Exon87613   55   III: 5016297-5016351 Caenorhabditis elegans
Exon87615   172   III: 5016404-5016575 Caenorhabditis elegans
Exon87616   329   III: 5016830-5017158 Caenorhabditis elegans
Exon87617   388   III: 5017263-5017650 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R144.7b.1 5008925 5017650 -1

1 Sequence

Length
4633

1 Sequence Ontology Term

Identifier Name Description
transcript