WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.8a.2 Sequence Name  F52C9.8a.2
Length (nt)  5541   Chromosome Location  III: 5311244-5321736
Chromosome . Primary Identifier  III Chromosome Location . Start  5311244
Chromosome Location . End  5321736 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.8a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004095 pqe-1 F52C9.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.8a F52C9.8a 3246   III: 5311260-5311329

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8a.2 5311244 5321736 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88396   86   III: 5311244-5311329 Caenorhabditis elegans
Exon88401   77   III: 5311771-5311847 Caenorhabditis elegans
Exon88408   54   III: 5311952-5312005 Caenorhabditis elegans
Exon88415   84   III: 5312054-5312137 Caenorhabditis elegans
Exon88422   93   III: 5312452-5312544 Caenorhabditis elegans
Exon88427   1504   III: 5312614-5314117 Caenorhabditis elegans
Exon88433   1601   III: 5314169-5315769 Caenorhabditis elegans
Exon88439   237   III: 5315809-5316045 Caenorhabditis elegans
Exon88445   177   III: 5316095-5316271 Caenorhabditis elegans
Exon88451   214   III: 5316699-5316912 Caenorhabditis elegans
Exon88459   731   III: 5319927-5320657 Caenorhabditis elegans
Exon88471   683   III: 5321054-5321736 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8a.2 5311244 5321736 1

1 Sequence

Length
5541

1 Sequence Ontology Term

Identifier Name Description
transcript