WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F52C9.8a Sequence Name  F52C9.8a
Length (nt)  3246   Chromosome Location  III: 5311260-5311329
Chromosome . Primary Identifier  III Chromosome Location . Start  5311260
Chromosome Location . End  5311329
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.8a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30802 PQE-1, isoform a 118.6 1081 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00047955
WBRNAi00047956
WBRNAi00005110
WBRNAi00006838

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F52C9.8a 5311260 5311329 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004095 pqe-1 F52C9.8 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:F52C9.8a 5311260 5311329 1
CDS:F52C9.8a 5311771 5311847 1
CDS:F52C9.8a 5311952 5312005 1
CDS:F52C9.8a 5312054 5312137 1
CDS:F52C9.8a 5312452 5312544 1
CDS:F52C9.8a 5312614 5314117 1
CDS:F52C9.8a 5314169 5315532 1

1 Sequence

Length
3246

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F52C9.8a.4 F52C9.8a.4 5599   III: 5311244-5321706
Transcript:F52C9.8a.3 F52C9.8a.3 5579   III: 5311244-5321735
Transcript:F52C9.8a.2 F52C9.8a.2 5541   III: 5311244-5321736
Transcript:F52C9.8a.1 F52C9.8a.1 5531   III: 5311246-5321734