WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.8a.1 Sequence Name  F52C9.8a.1
Length (nt)  5531   Chromosome Location  III: 5311246-5321734
Chromosome . Primary Identifier  III Chromosome Location . Start  5311246
Chromosome Location . End  5321734 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004095 pqe-1 F52C9.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.8a F52C9.8a 3246   III: 5311260-5311329

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8a.1 5311246 5321734 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88397   84   III: 5311246-5311329 Caenorhabditis elegans
Exon88400   77   III: 5311771-5311847 Caenorhabditis elegans
Exon88407   54   III: 5311952-5312005 Caenorhabditis elegans
Exon88414   84   III: 5312054-5312137 Caenorhabditis elegans
Exon88421   93   III: 5312452-5312544 Caenorhabditis elegans
Exon88426   1504   III: 5312614-5314117 Caenorhabditis elegans
Exon88432   1601   III: 5314169-5315769 Caenorhabditis elegans
Exon88441   231   III: 5315815-5316045 Caenorhabditis elegans
Exon88444   177   III: 5316095-5316271 Caenorhabditis elegans
Exon88450   214   III: 5316699-5316912 Caenorhabditis elegans
Exon88458   731   III: 5319927-5320657 Caenorhabditis elegans
Exon88468   681   III: 5321054-5321734 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8a.1 5311246 5321734 1

1 Sequence

Length
5531

1 Sequence Ontology Term

Identifier Name Description
transcript