WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D2.1c.1 Sequence Name  F56D2.1c.1
Length (nt)  1616   Chromosome Location  III: 5592158-5594325
Chromosome . Primary Identifier  III Chromosome Location . Start  5592158
Chromosome Location . End  5594325 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D2.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018963 ucr-1 F56D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D2.1c F56D2.1c 1422   III: 5592158-5592211

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D2.1c.1 5592158 5594325 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89272   54   III: 5592158-5592211 Caenorhabditis elegans
Exon89274   126   III: 5592354-5592479 Caenorhabditis elegans
Exon89276   217   III: 5592529-5592745 Caenorhabditis elegans
Exon89278   200   III: 5592795-5592994 Caenorhabditis elegans
Exon89283   243   III: 5593039-5593281 Caenorhabditis elegans
Exon89287   58   III: 5593331-5593388 Caenorhabditis elegans
Exon89289   118   III: 5593440-5593557 Caenorhabditis elegans
Exon89295   211   III: 5593610-5593820 Caenorhabditis elegans
Exon89299   130   III: 5593871-5594000 Caenorhabditis elegans
Exon89303   259   III: 5594067-5594325 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D2.1c.1 5592158 5594325 1

1 Sequence

Length
1616

1 Sequence Ontology Term

Identifier Name Description
transcript