WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R12B2.5b Sequence Name  R12B2.5b
Length (nt)  2334   Chromosome Location  III: 5830222-5830320
Chromosome . Primary Identifier  III Chromosome Location . Start  5830222
Chromosome Location . End  5830320
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R12B2.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE25078 MDT-15, isoform b 84.2 777 Caenorhabditis elegans
 

Other

74 RNAi

WormBase ID
WBRNAi00077566
WBRNAi00051832
WBRNAi00026096
WBRNAi00086200
WBRNAi00086201
WBRNAi00085369
WBRNAi00094000
WBRNAi00077563
WBRNAi00034880
WBRNAi00009066
WBRNAi00106149
WBRNAi00090996
WBRNAi00106519
WBRNAi00105931
WBRNAi00106003
WBRNAi00106094
WBRNAi00085232
WBRNAi00113873
WBRNAi00087239
WBRNAi00071285
WBRNAi00112424
WBRNAi00113883
WBRNAi00112433
WBRNAi00117268
WBRNAi00106502
WBRNAi00096929
WBRNAi00106861
WBRNAi00002481
WBRNAi00112415
WBRNAi00077565

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R12B2.5b 5830222 5830320 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007016 mdt-15 R12B2.5 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:R12B2.5b 5830222 5830320 -1
CDS:R12B2.5b 5830399 5830716 -1
CDS:R12B2.5b 5831067 5832221 -1
CDS:R12B2.5b 5832294 5832775 -1
CDS:R12B2.5b 5832835 5833058 -1
CDS:R12B2.5b 5833282 5833337 -1

1 Sequence

Length
2334

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R12B2.5b.1 R12B2.5b.1 3780   III: 5828557-5833745
Transcript:R12B2.5b.2 R12B2.5b.2 4232   III: 5828589-5833746