WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42A10.2a.1 Sequence Name  F42A10.2a.1
Length (nt)  2637   Chromosome Location  III: 6159453-6164589
Chromosome . Primary Identifier  III Chromosome Location . Start  6159453
Chromosome Location . End  6164589 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42A10.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003593 nfm-1 F42A10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42A10.2a F42A10.2a 1965   III: 6159879-6160100

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42A10.2a.1 6159453 6164589 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91481   648   III: 6159453-6160100 Caenorhabditis elegans
Exon91484   216   III: 6160231-6160446 Caenorhabditis elegans
Exon91487   219   III: 6160793-6161011 Caenorhabditis elegans
Exon91490   135   III: 6161088-6161222 Caenorhabditis elegans
Exon91493   135   III: 6161270-6161404 Caenorhabditis elegans
Exon91496   303   III: 6161480-6161782 Caenorhabditis elegans
Exon91499   150   III: 6161826-6161975 Caenorhabditis elegans
Exon91502   88   III: 6162077-6162164 Caenorhabditis elegans
Exon91505   271   III: 6162637-6162907 Caenorhabditis elegans
Exon91508   175   III: 6163019-6163193 Caenorhabditis elegans
Exon91513   297   III: 6164293-6164589 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42A10.2a.1 6159453 6164589 1

1 Sequence

Length
2637

1 Sequence Ontology Term

Identifier Name Description
transcript