WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47D12.1b.1 Sequence Name  F47D12.1b.1
Length (nt)  2170   Chromosome Location  III: 6309366-6320873
Chromosome . Primary Identifier  III Chromosome Location . Start  6309366
Chromosome Location . End  6320873 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47D12.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001518 gar-2 F47D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47D12.1b F47D12.1b 1845   III: 6309421-6309576

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47D12.1b.1 6309366 6320873 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91925   211   III: 6309366-6309576 Caenorhabditis elegans
Exon91931   155   III: 6314196-6314350 Caenorhabditis elegans
Exon91935   85   III: 6314399-6314483 Caenorhabditis elegans
Exon91939   222   III: 6314705-6314926 Caenorhabditis elegans
Exon91943   116   III: 6315304-6315419 Caenorhabditis elegans
Exon91948   171   III: 6317712-6317882 Caenorhabditis elegans
Exon91951   165   III: 6318141-6318305 Caenorhabditis elegans
Exon91955   292   III: 6318387-6318678 Caenorhabditis elegans
Exon91959   72   III: 6319038-6319109 Caenorhabditis elegans
Exon91963   126   III: 6319331-6319456 Caenorhabditis elegans
Exon91970   555   III: 6320319-6320873 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47D12.1b.1 6309366 6320873 1

1 Sequence

Length
2170

1 Sequence Ontology Term

Identifier Name Description
transcript