WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47D12.1c.1 Sequence Name  F47D12.1c.1
Length (nt)  2307   Chromosome Location  III: 6309376-6320870
Chromosome . Primary Identifier  III Chromosome Location . Start  6309376
Chromosome Location . End  6320870 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47D12.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001518 gar-2 F47D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47D12.1c F47D12.1c 1995   III: 6309421-6309576

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47D12.1c.1 6309376 6320870 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91926   201   III: 6309376-6309576 Caenorhabditis elegans
Exon91932   155   III: 6314196-6314350 Caenorhabditis elegans
Exon91936   85   III: 6314399-6314483 Caenorhabditis elegans
Exon91940   222   III: 6314705-6314926 Caenorhabditis elegans
Exon91944   116   III: 6315304-6315419 Caenorhabditis elegans
Exon91949   171   III: 6317712-6317882 Caenorhabditis elegans
Exon91952   165   III: 6318141-6318305 Caenorhabditis elegans
Exon91956   292   III: 6318387-6318678 Caenorhabditis elegans
Exon91960   72   III: 6319038-6319109 Caenorhabditis elegans
Exon91965   276   III: 6319331-6319606 Caenorhabditis elegans
Exon91969   552   III: 6320319-6320870 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47D12.1c.1 6309376 6320870 1

1 Sequence

Length
2307

1 Sequence Ontology Term

Identifier Name Description
transcript