WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A3.7.1 Sequence Name  C16A3.7.1
Length (nt)  3536   Chromosome Location  III: 6375379-6379173
Chromosome . Primary Identifier  III Chromosome Location . Start  6375379
Chromosome Location . End  6379173 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A3.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007048 nfx-1 C16A3.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A3.7 C16A3.7 3360   III: 6375391-6375604

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A3.7.1 6375379 6379173 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92119   226   III: 6375379-6375604 Caenorhabditis elegans
Exon92120   902   III: 6375661-6376562 Caenorhabditis elegans
Exon92121   532   III: 6376613-6377144 Caenorhabditis elegans
Exon92122   1010   III: 6377192-6378201 Caenorhabditis elegans
Exon92123   351   III: 6378252-6378602 Caenorhabditis elegans
Exon92124   515   III: 6378659-6379173 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A3.7.1 6375379 6379173 1

1 Sequence

Length
3536

1 Sequence Ontology Term

Identifier Name Description
transcript