WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13F6.6a.1 Sequence Name  R13F6.6a.1
Length (nt)  2437   Chromosome Location  III: 6853106-6856809
Chromosome . Primary Identifier  III Chromosome Location . Start  6853106
Chromosome Location . End  6856809 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13F6.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006971 zak-1 R13F6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13F6.6a R13F6.6a 1629   III: 6853300-6853419

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13F6.6a.1 6853106 6856809 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon93607   314   III: 6853106-6853419 Caenorhabditis elegans
Exon93611   207   III: 6853468-6853674 Caenorhabditis elegans
Exon93616   186   III: 6853924-6854109 Caenorhabditis elegans
Exon93621   129   III: 6854157-6854285 Caenorhabditis elegans
Exon93626   222   III: 6854330-6854551 Caenorhabditis elegans
Exon93631   227   III: 6854611-6854837 Caenorhabditis elegans
Exon93636   181   III: 6854894-6855074 Caenorhabditis elegans
Exon93641   78   III: 6855163-6855240 Caenorhabditis elegans
Exon93645   94   III: 6855287-6855380 Caenorhabditis elegans
Exon93648   192   III: 6855625-6855816 Caenorhabditis elegans
Exon93653   185   III: 6855873-6856057 Caenorhabditis elegans
Exon93662   422   III: 6856388-6856809 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13F6.6a.1 6853106 6856809 -1

1 Sequence

Length
2437

1 Sequence Ontology Term

Identifier Name Description
transcript