WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023466 Gene Name  R151.11
Sequence Name  ? R151.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in AFD based on RNA-seq studies. Is affected by ogt-1 based on RNA-seq studies. Is affected by Ethanol based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  Length (nt)  ? 132
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023466

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R151.11 R151.11 132   III: 7208613-7208744
 

Other

0 CDSs

14 RNAi Result

WormBase ID
WBRNAi00095701
WBRNAi00067183
WBRNAi00085476
WBRNAi00009078
WBRNAi00064911
WBRNAi00034941
WBRNAi00111679
WBRNAi00075724
WBRNAi00026125
WBRNAi00002470
WBRNAi00051975
WBRNAi00095068
WBRNAi00117823
WBRNAi00117822

5 Allele

Public Name
gk964518
gk963887
gk470325
gk784178
WBVar01566868

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023466 7208613 7208744 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage. Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00065158:AFD_enriched
  mRNAs that showed increased expression after growing 4 days in 17.1mM ethanol comparing to in water. Differentially expressed genes were found by Cuffdiff, with significant genes satisfying a threshold of false discovery rate (FDR) multiple testing corrected p-value (q-value) of less than 0.05 when the data from the two separate controls and ethanol-treated samples were combined for analysis. WBPaper00046128:ethanol_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023466 7208613 7208744 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
132

1 Sequence Ontology Term