WormMine: Gene WBGene00044943

• WormBase Gene ID: WBGene00044943
• Gene Name: R151.12
• Sequence Name: R151.12
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including swsn-1; hpl-2; and set-2 based on tiling array and RNA-seq studies.
• Biotype: SO:0001267
• Genetic Position: :±
• Length (nt): 131

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044943

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:R151.12	R151.12	131	III: 7209019-7209149

Other

0 CDSs

14 RNAi Result

• WBRNAi00095701
• WBRNAi00067183
• WBRNAi00085476
• WBRNAi00009078
• WBRNAi00064911
• WBRNAi00034941
• WBRNAi00111679
• WBRNAi00075724
• WBRNAi00026125
• WBRNAi00002470
• WBRNAi00051975
• WBRNAi00095068
• WBRNAi00117823
• WBRNAi00117822

7 Allele

• gk964518
• gk963887
• gk178024
• h15592
• WBVar00064082
• gk576627
• gk391121

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044943
• Start: 7209019
• End: 7209149
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly decreased expression in hpl-2(tm1489) comparing to in N2 animals.	DESeq2, adjusted p-value < 0.05, log2 fold change > 2 or < -2.	WBPaper00054493:hpl-2(tm1489)_downregulated
	Transcripts down regulated in hpl-2(tm1489) embryo comparing to N2 in tiling array analysis.	Oligos from the tiling array were mapped to chromosome coordinates of the exons from Wormbase WS180. Any oligo that mapped to a gene on both the Watson and Crick strands was excluded. The remaining oligos were then grouped together (perfect match and mismatch) into probe sets and written out into an Affymetrix CDF file. The CDF file was converted into an R-package and loaded into R. The expression values were calculated using the justRMA function from Bioconductor. This used a Benjamini and Hochberg false discovery rate correction.	WBPaper00040560:hpl-2_embryo_downregulated
	Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_upregulated
	Transcripts that showed significantly increased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms.	DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)	WBPaper00060764:swsn-1(os22ts)_upregulated
	Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_upregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044943
• Start: 7209019
• End: 7209149
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 131

1 Sequence Ontology Term