WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK688.5c.2 Sequence Name  ZK688.5c.2
Length (nt)  5263   Chromosome Location  III: 7885084-7891616
Chromosome . Primary Identifier  III Chromosome Location . Start  7885084
Chromosome Location . End  7891616 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK688.5c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022800 ZK688.5 ZK688.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK688.5c ZK688.5c 522   III: 7890845-7890873

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK688.5c.2 7885084 7891616 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96269   519   III: 7885084-7885602 Caenorhabditis elegans
Exon96279   171   III: 7885798-7885968 Caenorhabditis elegans
Exon96289   240   III: 7886030-7886269 Caenorhabditis elegans
Exon96295   693   III: 7886424-7887116 Caenorhabditis elegans
Exon96303   193   III: 7887162-7887354 Caenorhabditis elegans
Exon96311   2369   III: 7887779-7890147 Caenorhabditis elegans
Exon96319   263   III: 7890194-7890456 Caenorhabditis elegans
Exon96327   207   III: 7890557-7890763 Caenorhabditis elegans
Exon96333   59   III: 7890815-7890873 Caenorhabditis elegans
Exon96340   206   III: 7890921-7891126 Caenorhabditis elegans
Exon96346   167   III: 7891226-7891392 Caenorhabditis elegans
Exon96354   176   III: 7891441-7891616 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK688.5c.2 7885084 7891616 -1

1 Sequence

Length
5263

1 Sequence Ontology Term

Identifier Name Description
transcript