WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK688.5c.3 Sequence Name  ZK688.5c.3
Length (nt)  5300   Chromosome Location  III: 7885085-7891616
Chromosome . Primary Identifier  III Chromosome Location . Start  7885085
Chromosome Location . End  7891616 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK688.5c.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022800 ZK688.5 ZK688.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK688.5c ZK688.5c 522   III: 7890845-7890873

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK688.5c.3 7885085 7891616 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96271   562   III: 7885085-7885646 Caenorhabditis elegans
Exon96280   171   III: 7885798-7885968 Caenorhabditis elegans
Exon96287   234   III: 7886030-7886263 Caenorhabditis elegans
Exon96296   693   III: 7886424-7887116 Caenorhabditis elegans
Exon96304   193   III: 7887162-7887354 Caenorhabditis elegans
Exon96312   2369   III: 7887779-7890147 Caenorhabditis elegans
Exon96320   263   III: 7890194-7890456 Caenorhabditis elegans
Exon96328   207   III: 7890557-7890763 Caenorhabditis elegans
Exon96334   59   III: 7890815-7890873 Caenorhabditis elegans
Exon96341   206   III: 7890921-7891126 Caenorhabditis elegans
Exon96347   167   III: 7891226-7891392 Caenorhabditis elegans
Exon96355   176   III: 7891441-7891616 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK688.5c.3 7885085 7891616 -1

1 Sequence

Length
5300

1 Sequence Ontology Term

Identifier Name Description
transcript