WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29E4.5a.1 Sequence Name  C29E4.5a.1
Length (nt)  2178   Chromosome Location  III: 7917987-7924921
Chromosome . Primary Identifier  III Chromosome Location . Start  7917987
Chromosome Location . End  7924921 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29E4.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016203 tag-250 C29E4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29E4.5a C29E4.5a 1881   III: 7918278-7918499

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29E4.5a.1 7917987 7924921 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96415   513   III: 7917987-7918499 Caenorhabditis elegans
Exon96418   224   III: 7918546-7918769 Caenorhabditis elegans
Exon96422   65   III: 7919267-7919331 Caenorhabditis elegans
Exon96425   191   III: 7919387-7919577 Caenorhabditis elegans
Exon96428   201   III: 7919626-7919826 Caenorhabditis elegans
Exon96430   128   III: 7919876-7920003 Caenorhabditis elegans
Exon96437   184   III: 7921097-7921280 Caenorhabditis elegans
Exon96440   189   III: 7921590-7921778 Caenorhabditis elegans
Exon96443   89   III: 7921829-7921917 Caenorhabditis elegans
Exon96451   88   III: 7923202-7923289 Caenorhabditis elegans
Exon96454   82   III: 7923576-7923657 Caenorhabditis elegans
Exon96457   124   III: 7923921-7924044 Caenorhabditis elegans
Exon96461   100   III: 7924822-7924921 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29E4.5a.1 7917987 7924921 -1

1 Sequence

Length
2178

1 Sequence Ontology Term

Identifier Name Description
transcript