WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50C3.2.1 Sequence Name  C50C3.2.1
Length (nt)  6822   Chromosome Location  III: 8181881-8189372
Chromosome . Primary Identifier  III Chromosome Location . Start  8181881
Chromosome Location . End  8189372 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50C3.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016800 spc-2 C50C3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50C3.2 C50C3.2 6711   III: 8181933-8181977

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.2.1 8181881 8189372 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97191   97   III: 8181881-8181977 Caenorhabditis elegans
Exon97192   104   III: 8182032-8182135 Caenorhabditis elegans
Exon97193   214   III: 8182186-8182399 Caenorhabditis elegans
Exon97194   840   III: 8182450-8183289 Caenorhabditis elegans
Exon97195   774   III: 8183334-8184107 Caenorhabditis elegans
Exon97196   414   III: 8184156-8184569 Caenorhabditis elegans
Exon97197   307   III: 8184612-8184918 Caenorhabditis elegans
Exon97198   889   III: 8184966-8185854 Caenorhabditis elegans
Exon97199   1140   III: 8185904-8187043 Caenorhabditis elegans
Exon97200   295   III: 8187091-8187385 Caenorhabditis elegans
Exon97201   615   III: 8187432-8188046 Caenorhabditis elegans
Exon97202   717   III: 8188091-8188807 Caenorhabditis elegans
Exon97203   116   III: 8188861-8188976 Caenorhabditis elegans
Exon97204   127   III: 8189024-8189150 Caenorhabditis elegans
Exon97205   173   III: 8189200-8189372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.2.1 8181881 8189372 1

1 Sequence

Length
6822

1 Sequence Ontology Term

Identifier Name Description
transcript