WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05D3.4a.1 Sequence Name  R05D3.4a.1
Length (nt)  2865   Chromosome Location  III: 8358625-8362446
Chromosome . Primary Identifier  III Chromosome Location . Start  8358625
Chromosome Location . End  8362446 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05D3.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007008 rfp-1 R05D3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05D3.4a R05D3.4a 2505   III: 8358627-8358752

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.4a.1 8358625 8362446 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97709   128   III: 8358625-8358752 Caenorhabditis elegans
Exon97710   168   III: 8358807-8358974 Caenorhabditis elegans
Exon97712   140   III: 8359024-8359163 Caenorhabditis elegans
Exon97714   484   III: 8359213-8359696 Caenorhabditis elegans
Exon97716   126   III: 8359759-8359884 Caenorhabditis elegans
Exon97718   621   III: 8359976-8360596 Caenorhabditis elegans
Exon97721   380   III: 8360734-8361113 Caenorhabditis elegans
Exon97722   381   III: 8361163-8361543 Caenorhabditis elegans
Exon97724   437   III: 8362010-8362446 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.4a.1 8358625 8362446 1

1 Sequence

Length
2865

1 Sequence Ontology Term

Identifier Name Description
transcript