WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R05D3.4a Sequence Name  R05D3.4a
Length (nt)  2505   Chromosome Location  III: 8358627-8358752
Chromosome . Primary Identifier  III Chromosome Location . Start  8358627
Chromosome Location . End  8358752
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05D3.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE00283 RFP-1, isoform a 97.1 834 Caenorhabditis elegans
 

Other

29 RNAi

WormBase ID
WBRNAi00094775
WBRNAi00051281
WBRNAi00074594
WBRNAi00074597
WBRNAi00074596
WBRNAi00074598
WBRNAi00074600
WBRNAi00026026
WBRNAi00034603
WBRNAi00063543
WBRNAi00074601
WBRNAi00074599
WBRNAi00076596
WBRNAi00106069
WBRNAi00063538
WBRNAi00063540
WBRNAi00063542
WBRNAi00005160
WBRNAi00064202
WBRNAi00063537
WBRNAi00063539
WBRNAi00063541
WBRNAi00074595
WBRNAi00008128
WBRNAi00072591
WBRNAi00072592
WBRNAi00009032
WBRNAi00064176
WBRNAi00091411

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R05D3.4a 8358627 8358752 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007008 rfp-1 R05D3.4 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:R05D3.4a 8358627 8358752 1
CDS:R05D3.4a 8358807 8358974 1
CDS:R05D3.4a 8359024 8359163 1
CDS:R05D3.4a 8359213 8359696 1
CDS:R05D3.4a 8359759 8359884 1
CDS:R05D3.4a 8359976 8360596 1
CDS:R05D3.4a 8360734 8361113 1
CDS:R05D3.4a 8361163 8361543 1
CDS:R05D3.4a 8362010 8362088 1

1 Sequence

Length
2505

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R05D3.4a.1 R05D3.4a.1 2865   III: 8358625-8362446