WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04D8.1b.1 Sequence Name  C04D8.1b.1
Length (nt)  5383   Chromosome Location  III: 8495018-8518881
Chromosome . Primary Identifier  III Chromosome Location . Start  8495018
Chromosome Location . End  8518881 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04D8.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015418 pac-1 C04D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04D8.1b C04D8.1b 4815   III: 8495110-8495262

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04D8.1b.1 8495018 8518881 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98036   245   III: 8495018-8495262 Caenorhabditis elegans
Exon98039   148   III: 8496098-8496245 Caenorhabditis elegans
Exon98042   196   III: 8497057-8497252 Caenorhabditis elegans
Exon98045   253   III: 8497629-8497881 Caenorhabditis elegans
Exon98047   148   III: 8497935-8498082 Caenorhabditis elegans
Exon98051   187   III: 8498215-8498401 Caenorhabditis elegans
Exon98054   86   III: 8498474-8498559 Caenorhabditis elegans
Exon98060   222   III: 8502620-8502841 Caenorhabditis elegans
Exon98066   105   III: 8507630-8507734 Caenorhabditis elegans
Exon98071   221   III: 8507813-8508033 Caenorhabditis elegans
Exon98076   255   III: 8508727-8508981 Caenorhabditis elegans
Exon98081   312   III: 8509240-8509551 Caenorhabditis elegans
Exon98088   148   III: 8513203-8513350 Caenorhabditis elegans
Exon98093   88   III: 8514023-8514110 Caenorhabditis elegans
Exon98099   898   III: 8515062-8515959 Caenorhabditis elegans
Exon98105   846   III: 8516359-8517204 Caenorhabditis elegans
Exon98111   146   III: 8517320-8517465 Caenorhabditis elegans
Exon98117   211   III: 8517517-8517727 Caenorhabditis elegans
Exon98127   668   III: 8518214-8518881 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04D8.1b.1 8495018 8518881 1

1 Sequence

Length
5383

1 Sequence Ontology Term

Identifier Name Description
transcript