WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C04D8.1b Sequence Name  C04D8.1b
Length (nt)  4815   Chromosome Location  III: 8495110-8495262
Chromosome . Primary Identifier  III Chromosome Location . Start  8495110
Chromosome Location . End  8495262
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04D8.1b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42977 PAC-1, isoform b 173.3 1604 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00039589
WBRNAi00111060
WBRNAi00010104
WBRNAi00021621
WBRNAi00005216

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C04D8.1b 8495110 8495262 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015418 pac-1 C04D8.1 Caenorhabditis elegans

19 Locations


Feature . Primary Identifier
Start End Strand
CDS:C04D8.1b 8495110 8495262 1
CDS:C04D8.1b 8496098 8496245 1
CDS:C04D8.1b 8497057 8497252 1
CDS:C04D8.1b 8497629 8497881 1
CDS:C04D8.1b 8497935 8498082 1
CDS:C04D8.1b 8498215 8498401 1
CDS:C04D8.1b 8498474 8498559 1
CDS:C04D8.1b 8502620 8502841 1
CDS:C04D8.1b 8507630 8507734 1
CDS:C04D8.1b 8507813 8508033 1
CDS:C04D8.1b 8508727 8508981 1
CDS:C04D8.1b 8509240 8509551 1
CDS:C04D8.1b 8513203 8513350 1
CDS:C04D8.1b 8514023 8514110 1
CDS:C04D8.1b 8515062 8515959 1
CDS:C04D8.1b 8516359 8517204 1
CDS:C04D8.1b 8517320 8517465 1
CDS:C04D8.1b 8517517 8517727 1
CDS:C04D8.1b 8518214 8518405 1

1 Sequence

Length
4815

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C04D8.1b.1 C04D8.1b.1 5383   III: 8495018-8518881