WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F2.1.1 Sequence Name  F54F2.1.1
Length (nt)  3972   Chromosome Location  III: 8818899-8825266
Chromosome . Primary Identifier  III Chromosome Location . Start  8818899
Chromosome Location . End  8825266 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F2.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003929 pat-2 F54F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F2.1 F54F2.1 3681   III: 8818902-8819074

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.1.1 8818899 8825266 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98998   176   III: 8818899-8819074 Caenorhabditis elegans
Exon98999   238   III: 8819122-8819359 Caenorhabditis elegans
Exon99000   124   III: 8819406-8819529 Caenorhabditis elegans
Exon99001   412   III: 8819847-8820258 Caenorhabditis elegans
Exon99002   230   III: 8820322-8820551 Caenorhabditis elegans
Exon99003   476   III: 8820801-8821276 Caenorhabditis elegans
Exon99004   137   III: 8821333-8821469 Caenorhabditis elegans
Exon99006   195   III: 8821694-8821888 Caenorhabditis elegans
Exon99007   712   III: 8822363-8823074 Caenorhabditis elegans
Exon99008   837   III: 8823532-8824368 Caenorhabditis elegans
Exon99009   435   III: 8824832-8825266 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.1.1 8818899 8825266 1

1 Sequence

Length
3972

1 Sequence Ontology Term

Identifier Name Description
transcript