WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R107.6a Sequence Name  R107.6a
Length (nt)  3063   Chromosome Location  III: 9055052-9055144
Chromosome . Primary Identifier  III Chromosome Location . Start  9055052
Chromosome Location . End  9055144
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R107.6a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE37546 CLS-2, isoform a 112.3 1020 Caenorhabditis elegans
 

Other

12 RNAi

WormBase ID
WBRNAi00026073
WBRNAi00080603
WBRNAi00086487
WBRNAi00078247
WBRNAi00084901
WBRNAi00009056
WBRNAi00078242
WBRNAi00114369
WBRNAi00051671
WBRNAi00078244
WBRNAi00002437
WBRNAi00084896

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:R107.6a 9055052 9055144 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000549 cls-2 R107.6 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier 		Start End Strand
CDS:R107.6a 9055052 9055144 1
CDS:R107.6a 9055194 9055995 1
CDS:R107.6a 9056041 9056696 1
CDS:R107.6a 9056744 9057127 1
CDS:R107.6a 9057172 9057555 1
CDS:R107.6a 9057781 9058221 1
CDS:R107.6a 9058273 9058392 1
CDS:R107.6a 9058444 9058626 1

1 Sequence

Length
3063

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R107.6a.1 R107.6a.1 3332   III: 9055052-9058895