WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R107.8.1 Sequence Name  R107.8.1
Length (nt)  4555   Chromosome Location  III: 9060221-9071472
Chromosome . Primary Identifier  III Chromosome Location . Start  9060221
Chromosome Location . End  9071472 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R107.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003001 lin-12 R107.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R107.8 R107.8 4290   III: 9060402-9060524

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R107.8.1 9060221 9071472 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon99599   304   III: 9060221-9060524 Caenorhabditis elegans
Exon99600   348   III: 9060912-9061259 Caenorhabditis elegans
Exon99601   1924   III: 9061570-9063493 Caenorhabditis elegans
Exon99602   129   III: 9063542-9063670 Caenorhabditis elegans
Exon99603   133   III: 9063717-9063849 Caenorhabditis elegans
Exon99604   1117   III: 9064154-9065270 Caenorhabditis elegans
Exon99605   191   III: 9066723-9066913 Caenorhabditis elegans
Exon99606   57   III: 9067929-9067985 Caenorhabditis elegans
Exon99607   119   III: 9069601-9069719 Caenorhabditis elegans
Exon99609   233   III: 9071240-9071472 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R107.8.1 9060221 9071472 -1

1 Sequence

Length
4555

1 Sequence Ontology Term

Identifier Name Description
transcript