WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G8.5.1 Sequence Name  F54G8.5.1
Length (nt)  2594   Chromosome Location  III: 9157204-9161653
Chromosome . Primary Identifier  III Chromosome Location . Start  9157204
Chromosome Location . End  9161653 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004223 ptr-9 F54G8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G8.5 F54G8.5 2535   III: 9157243-9157515

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.5.1 9157204 9161653 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon99822   312   III: 9157204-9157515 Caenorhabditis elegans
Exon99823   201   III: 9157564-9157764 Caenorhabditis elegans
Exon99824   388   III: 9157929-9158316 Caenorhabditis elegans
Exon99825   346   III: 9158366-9158711 Caenorhabditis elegans
Exon99826   147   III: 9158756-9158902 Caenorhabditis elegans
Exon99827   180   III: 9159310-9159489 Caenorhabditis elegans
Exon99828   323   III: 9159536-9159858 Caenorhabditis elegans
Exon99829   89   III: 9160087-9160175 Caenorhabditis elegans
Exon99830   102   III: 9160234-9160335 Caenorhabditis elegans
Exon99831   102   III: 9160380-9160481 Caenorhabditis elegans
Exon99832   266   III: 9160528-9160793 Caenorhabditis elegans
Exon99833   73   III: 9161455-9161527 Caenorhabditis elegans
Exon99834   65   III: 9161589-9161653 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.5.1 9157204 9161653 -1

1 Sequence

Length
2594

1 Sequence Ontology Term

Identifier Name Description
transcript