WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B4.1.1 Sequence Name  C48B4.1.1
Length (nt)  2084   Chromosome Location  III: 9586618-9592192
Chromosome . Primary Identifier  III Chromosome Location . Start  9586618
Chromosome Location . End  9592192 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008167 acox-1.5 C48B4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B4.1 C48B4.1 1980   III: 9586713-9586838

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.1.1 9586618 9592192 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101129   221   III: 9586618-9586838 Caenorhabditis elegans
Exon101130   282   III: 9586890-9587171 Caenorhabditis elegans
Exon101131   143   III: 9587623-9587765 Caenorhabditis elegans
Exon101132   159   III: 9588109-9588267 Caenorhabditis elegans
Exon101133   710   III: 9588705-9589414 Caenorhabditis elegans
Exon101134   94   III: 9589721-9589814 Caenorhabditis elegans
Exon101135   70   III: 9590548-9590617 Caenorhabditis elegans
Exon101136   165   III: 9590727-9590891 Caenorhabditis elegans
Exon101137   166   III: 9591347-9591512 Caenorhabditis elegans
Exon101138   74   III: 9592119-9592192 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.1.1 9586618 9592192 -1

1 Sequence

Length
2084

1 Sequence Ontology Term

Identifier Name Description
transcript