WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39A1A.5a Sequence Name  Y39A1A.5a
Length (nt)  1554   Chromosome Location  III: 10605370-10605432
Chromosome . Primary Identifier  III Chromosome Location . Start  10605370
Chromosome Location . End  10605432
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE44298 RABX-5, isoform a 58.0 517 Caenorhabditis elegans
 

Other

12 RNAi

WormBase ID
WBRNAi00056115
WBRNAi00056116
WBRNAi00020346
WBRNAi00087673
WBRNAi00006356
WBRNAi00006748
WBRNAi00110531
WBRNAi00087635
WBRNAi00082842
WBRNAi00110529
WBRNAi00087637
WBRNAi00087636

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39A1A.5a 10605370 10605432 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012644 rabx-5 Y39A1A.5 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39A1A.5a 10605370 10605432 1
CDS:Y39A1A.5a 10605612 10605727 1
CDS:Y39A1A.5a 10606049 10606149 1
CDS:Y39A1A.5a 10606244 10606295 1
CDS:Y39A1A.5a 10610009 10610556 1
CDS:Y39A1A.5a 10611182 10611319 1
CDS:Y39A1A.5a 10611631 10611883 1
CDS:Y39A1A.5a 10612231 10612312 1
CDS:Y39A1A.5a 10612633 10612833 1

1 Sequence

Length
1554

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39A1A.5a.1 Y39A1A.5a.1 3672   III: 10605349-10614930