WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.13b.1 Sequence Name  Y39A1A.13b.1
Length (nt)  1094   Chromosome Location  III: 10646228-10648813
Chromosome . Primary Identifier  III Chromosome Location . Start  10646228
Chromosome Location . End  10648813 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.13b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012651 orc-4 Y39A1A.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.13b Y39A1A.13b 792   III: 10647027-10647290

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.13b.1 10646228 10648813 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103760   32   III: 10646228-10646259 Caenorhabditis elegans
Exon103762   60   III: 10646350-10646409 Caenorhabditis elegans
Exon103765   474   III: 10646817-10647290 Caenorhabditis elegans
Exon103769   169   III: 10647618-10647786 Caenorhabditis elegans
Exon103773   114   III: 10648178-10648291 Caenorhabditis elegans
Exon103777   142   III: 10648517-10648658 Caenorhabditis elegans
Exon103780   103   III: 10648711-10648813 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.13b.1 10646228 10648813 1

1 Sequence

Length
1094

1 Sequence Ontology Term

Identifier Name Description
transcript