WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39A1A.13b Sequence Name  Y39A1A.13b
Length (nt)  792   Chromosome Location  III: 10647027-10647290
Chromosome . Primary Identifier  III Chromosome Location . Start  10647027
Chromosome Location . End  10647290
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.13b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE52015 ORC-4, isoform b 30.7 263 Caenorhabditis elegans
 

Other

12 RNAi

WormBase ID
WBRNAi00056095
WBRNAi00026659
WBRNAi00002638
WBRNAi00027518
WBRNAi00020339
WBRNAi00033602
WBRNAi00087029
WBRNAi00087028
WBRNAi00087030
WBRNAi00087031
WBRNAi00087184
WBRNAi00087032

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39A1A.13b 10647027 10647290 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012651 orc-4 Y39A1A.13 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39A1A.13b 10647027 10647290 1
CDS:Y39A1A.13b 10647618 10647786 1
CDS:Y39A1A.13b 10648178 10648291 1
CDS:Y39A1A.13b 10648517 10648658 1
CDS:Y39A1A.13b 10648711 10648813 1

1 Sequence

Length
792

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39A1A.13b.1 Y39A1A.13b.1 1094   III: 10646228-10648813
Transcript:Y39A1A.13b.2 Y39A1A.13b.2 1119   III: 10646344-10648860
Transcript:Y39A1A.13b.3 Y39A1A.13b.3 1044   III: 10646816-10648854