WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1B.2b.1 Sequence Name  Y39A1B.2b.1
Length (nt)  2175   Chromosome Location  III: 10781881-10789672
Chromosome . Primary Identifier  III Chromosome Location . Start  10781881
Chromosome Location . End  10789672 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1B.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004233 ptr-19 Y39A1B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1B.2b Y39A1B.2b 2073   III: 10781881-10782146

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.2b.1 10781881 10789672 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104106   266   III: 10781881-10782146 Caenorhabditis elegans
Exon104109   112   III: 10782367-10782478 Caenorhabditis elegans
Exon104113   122   III: 10782887-10783008 Caenorhabditis elegans
Exon104119   81   III: 10785639-10785719 Caenorhabditis elegans
Exon104122   113   III: 10785904-10786016 Caenorhabditis elegans
Exon104125   104   III: 10786061-10786164 Caenorhabditis elegans
Exon104128   86   III: 10786215-10786300 Caenorhabditis elegans
Exon104131   84   III: 10786656-10786739 Caenorhabditis elegans
Exon104134   119   III: 10786789-10786907 Caenorhabditis elegans
Exon104137   470   III: 10788022-10788491 Caenorhabditis elegans
Exon104139   467   III: 10788991-10789457 Caenorhabditis elegans
Exon104142   151   III: 10789522-10789672 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.2b.1 10781881 10789672 1

1 Sequence

Length
2175

1 Sequence Ontology Term

Identifier Name Description
transcript