WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1C.2.1 Sequence Name  Y39A1C.2.1
Length (nt)  3310   Chromosome Location  III: 10858284-10866946
Chromosome . Primary Identifier  III Chromosome Location . Start  10858284
Chromosome Location . End  10866946 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1C.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003898 oxi-1 Y39A1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1C.2 Y39A1C.2 3201   III: 10858313-10858458

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1C.2.1 10858284 10866946 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104262   175   III: 10858284-10858458 Caenorhabditis elegans
Exon104263   133   III: 10859112-10859244 Caenorhabditis elegans
Exon104264   342   III: 10859748-10860089 Caenorhabditis elegans
Exon104265   380   III: 10860634-10861013 Caenorhabditis elegans
Exon104266   260   III: 10861728-10861987 Caenorhabditis elegans
Exon104267   275   III: 10862123-10862397 Caenorhabditis elegans
Exon104268   92   III: 10862553-10862644 Caenorhabditis elegans
Exon104269   119   III: 10862772-10862890 Caenorhabditis elegans
Exon104270   121   III: 10863218-10863338 Caenorhabditis elegans
Exon104271   404   III: 10864103-10864506 Caenorhabditis elegans
Exon104272   349   III: 10865295-10865643 Caenorhabditis elegans
Exon104273   159   III: 10866236-10866394 Caenorhabditis elegans
Exon104274   501   III: 10866446-10866946 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1C.2.1 10858284 10866946 1

1 Sequence

Length
3310

1 Sequence Ontology Term

Identifier Name Description
transcript