WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.8.1 Sequence Name  Y48A6B.8.1
Length (nt)  1748   Chromosome Location  III: 11027242-11029437
Chromosome . Primary Identifier  III Chromosome Location . Start  11027242
Chromosome Location . End  11029437 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012969 Y48A6B.8 Y48A6B.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.8 Y48A6B.8 1656   III: 11027334-11027403

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.8.1 11027242 11029437 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104570   162   III: 11027242-11027403 Caenorhabditis elegans
Exon104571   159   III: 11027454-11027612 Caenorhabditis elegans
Exon104572   105   III: 11027666-11027770 Caenorhabditis elegans
Exon104573   73   III: 11027826-11027898 Caenorhabditis elegans
Exon104574   112   III: 11027950-11028061 Caenorhabditis elegans
Exon104575   252   III: 11028106-11028357 Caenorhabditis elegans
Exon104576   114   III: 11028402-11028515 Caenorhabditis elegans
Exon104577   101   III: 11028569-11028669 Caenorhabditis elegans
Exon104578   640   III: 11028722-11029361 Caenorhabditis elegans
Exon104579   30   III: 11029408-11029437 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.8.1 11027242 11029437 -1

1 Sequence

Length
1748

1 Sequence Ontology Term

Identifier Name Description
transcript