WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13t.1 Sequence Name  Y48A6B.13t.1
Length (nt)  1802   Chromosome Location  III: 11051949-11061971
Chromosome . Primary Identifier  III Chromosome Location . Start  11051949
Chromosome Location . End  11061971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13t.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13t Y48A6B.13t 1668   III: 11051953-11052057

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13t.1 11051949 11061971 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104711   109   III: 11051949-11052057 Caenorhabditis elegans
Exon104737   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104764   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104792   112   III: 11057284-11057395 Caenorhabditis elegans
Exon104817   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104845   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104872   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104889   162   III: 11061810-11061971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13t.1 11051949 11061971 1

1 Sequence

Length
1802

1 Sequence Ontology Term

Identifier Name Description
transcript