WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6C.5b.1 Sequence Name  Y48A6C.5b.1
Length (nt)  2092   Chromosome Location  III: 11131775-11136688
Chromosome . Primary Identifier  III Chromosome Location . Start  11131775
Chromosome Location . End  11136688 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6C.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004010 pha-1 Y48A6C.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6C.5b Y48A6C.5b 1362   III: 11131799-11131846

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6C.5b.1 11131775 11136688 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105055   72   III: 11131775-11131846 Caenorhabditis elegans
Exon105058   99   III: 11132459-11132557 Caenorhabditis elegans
Exon105060   179   III: 11132672-11132850 Caenorhabditis elegans
Exon105062   122   III: 11132903-11133024 Caenorhabditis elegans
Exon105064   169   III: 11133094-11133262 Caenorhabditis elegans
Exon105066   1451   III: 11135238-11136688 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6C.5b.1 11131775 11136688 1

1 Sequence

Length
2092

1 Sequence Ontology Term

Identifier Name Description
transcript