WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.11.1 Sequence Name  Y47D3A.11.1
Length (nt)  1933   Chromosome Location  III: 11218791-11222733
Chromosome . Primary Identifier  III Chromosome Location . Start  11218791
Chromosome Location . End  11222733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.11.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012925 wht-8 Y47D3A.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.11 Y47D3A.11 1860   III: 11218797-11218815

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.11.1 11218791 11222733 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105136   25   III: 11218791-11218815 Caenorhabditis elegans
Exon105138   101   III: 11219226-11219326 Caenorhabditis elegans
Exon105139   138   III: 11219378-11219515 Caenorhabditis elegans
Exon105140   111   III: 11219560-11219670 Caenorhabditis elegans
Exon105141   160   III: 11219953-11220112 Caenorhabditis elegans
Exon105142   116   III: 11220165-11220280 Caenorhabditis elegans
Exon105143   90   III: 11220337-11220426 Caenorhabditis elegans
Exon105144   123   III: 11220475-11220597 Caenorhabditis elegans
Exon105145   188   III: 11220679-11220866 Caenorhabditis elegans
Exon105146   112   III: 11220916-11221027 Caenorhabditis elegans
Exon105147   327   III: 11221351-11221677 Caenorhabditis elegans
Exon105148   131   III: 11222070-11222200 Caenorhabditis elegans
Exon105149   311   III: 11222423-11222733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.11.1 11218791 11222733 1

1 Sequence

Length
1933

1 Sequence Ontology Term

Identifier Name Description
transcript