WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3B.5b.1 Sequence Name  Y47D3B.5b.1
Length (nt)  3832   Chromosome Location  III: 11410678-11424661
Chromosome . Primary Identifier  III Chromosome Location . Start  11410678
Chromosome Location . End  11424661 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3B.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006683 twk-31 Y47D3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3B.5b Y47D3B.5b 3411   III: 11410748-11410851

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.5b.1 11410678 11424661 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105566   174   III: 11410678-11410851 Caenorhabditis elegans
Exon105569   181   III: 11414324-11414504 Caenorhabditis elegans
Exon105572   111   III: 11415365-11415475 Caenorhabditis elegans
Exon105574   128   III: 11415532-11415659 Caenorhabditis elegans
Exon105576   93   III: 11415819-11415911 Caenorhabditis elegans
Exon105578   179   III: 11416640-11416818 Caenorhabditis elegans
Exon105580   139   III: 11416869-11417007 Caenorhabditis elegans
Exon105582   221   III: 11417898-11418118 Caenorhabditis elegans
Exon105584   143   III: 11418191-11418333 Caenorhabditis elegans
Exon105586   225   III: 11418385-11418609 Caenorhabditis elegans
Exon105588   68   III: 11419027-11419094 Caenorhabditis elegans
Exon105590   178   III: 11419143-11419320 Caenorhabditis elegans
Exon105592   129   III: 11419373-11419501 Caenorhabditis elegans
Exon105594   153   III: 11419983-11420135 Caenorhabditis elegans
Exon105596   69   III: 11420186-11420254 Caenorhabditis elegans
Exon105598   185   III: 11420309-11420493 Caenorhabditis elegans
Exon105600   100   III: 11420537-11420636 Caenorhabditis elegans
Exon105602   99   III: 11421412-11421510 Caenorhabditis elegans
Exon105604   539   III: 11421562-11422100 Caenorhabditis elegans
Exon105607   154   III: 11422928-11423081 Caenorhabditis elegans
Exon105610   102   III: 11423441-11423542 Caenorhabditis elegans
Exon105612   462   III: 11424200-11424661 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.5b.1 11410678 11424661 1

1 Sequence

Length
3832

1 Sequence Ontology Term

Identifier Name Description
transcript