WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201258 Gene Name  Y66D12A.29
Sequence Name  ? Y66D12A.29 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Is affected by sodium arsenite based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 126
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201258

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y66D12A.29 Y66D12A.29 126   III: 11554797-11554922
 

Other

0 CDSs

0 RNAi Result

5 Allele

Public Name
gk963887
WBVar02030691
gk352482
gk533369
gk186449

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201258 11554797 11554922 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_11552399..11554796   2398 III: 11552399-11554796 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Genes that showed significantly changed expression in oxidative stressed N2 animals caused by 10mM sodium arsenite (NaAsO2) comparing to in unstressed N2. R-Bioconductor package. WBPaper00049266:NaAsO2-Stress_regulated_N2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201258 11554797 11554922 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
126

1 Sequence Ontology Term