WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49E10.11c.1 Sequence Name  Y49E10.11c.1
Length (nt)  4705   Chromosome Location  III: 12398901-12421570
Chromosome . Primary Identifier  III Chromosome Location . Start  12398901
Chromosome Location . End  12421570 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49E10.11c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013034 tat-1 Y49E10.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.11c Y49E10.11c 3579   III: 12401682-12402063

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.11c.1 12398901 12421570 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107075   560   III: 12398901-12399460 Caenorhabditis elegans
Exon107082   125   III: 12400046-12400170 Caenorhabditis elegans
Exon107083   668   III: 12401396-12402063 Caenorhabditis elegans
Exon107088   93   III: 12404785-12404877 Caenorhabditis elegans
Exon107092   257   III: 12405722-12405978 Caenorhabditis elegans
Exon107096   141   III: 12407302-12407442 Caenorhabditis elegans
Exon107100   134   III: 12407652-12407785 Caenorhabditis elegans
Exon107104   155   III: 12407928-12408082 Caenorhabditis elegans
Exon107108   530   III: 12409690-12410219 Caenorhabditis elegans
Exon107112   539   III: 12412124-12412662 Caenorhabditis elegans
Exon107116   301   III: 12413753-12414053 Caenorhabditis elegans
Exon107120   113   III: 12414860-12414972 Caenorhabditis elegans
Exon107124   240   III: 12415563-12415802 Caenorhabditis elegans
Exon107128   307   III: 12417470-12417776 Caenorhabditis elegans
Exon107132   186   III: 12418846-12419031 Caenorhabditis elegans
Exon107136   100   III: 12420074-12420173 Caenorhabditis elegans
Exon107140   58   III: 12420224-12420281 Caenorhabditis elegans
Exon107143   101   III: 12420622-12420722 Caenorhabditis elegans
Exon107145   97   III: 12421474-12421570 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.11c.1 12398901 12421570 -1

1 Sequence

Length
4705

1 Sequence Ontology Term

Identifier Name Description
transcript