WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.8f.1 Sequence Name  Y111B2A.8f.1
Length (nt)  2406   Chromosome Location  III: 12539004-12575366
Chromosome . Primary Identifier  III Chromosome Location . Start  12539004
Chromosome Location . End  12575366 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.8f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013732 aakg-1 Y111B2A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.8f Y111B2A.8f 2406   III: 12539004-12539285

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.8f.1 12539004 12575366 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107345   282   III: 12539004-12539285 Caenorhabditis elegans
Exon107351   111   III: 12540289-12540399 Caenorhabditis elegans
Exon107358   276   III: 12540677-12540952 Caenorhabditis elegans
Exon107365   256   III: 12542693-12542948 Caenorhabditis elegans
Exon107372   223   III: 12544619-12544841 Caenorhabditis elegans
Exon107376   73   III: 12547235-12547307 Caenorhabditis elegans
Exon107386   252   III: 12559999-12560250 Caenorhabditis elegans
Exon107389   143   III: 12561315-12561457 Caenorhabditis elegans
Exon107392   75   III: 12561805-12561879 Caenorhabditis elegans
Exon107395   222   III: 12572642-12572863 Caenorhabditis elegans
Exon107397   192   III: 12574633-12574824 Caenorhabditis elegans
Exon107399   74   III: 12574877-12574950 Caenorhabditis elegans
Exon107401   70   III: 12575091-12575160 Caenorhabditis elegans
Exon107402   157   III: 12575210-12575366 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.8f.1 12539004 12575366 -1

1 Sequence

Length
2406

1 Sequence Ontology Term

Identifier Name Description
transcript