WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.14s.1 Sequence Name  Y111B2A.14s.1
Length (nt)  3788   Chromosome Location  III: 12626568-12640476
Chromosome . Primary Identifier  III Chromosome Location . Start  12626568
Chromosome Location . End  12640476 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.14s.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14s Y111B2A.14s 2448   III: 12626575-12626718

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14s.1 12626568 12640476 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107449   151   III: 12626568-12626718 Caenorhabditis elegans
Exon107463   81   III: 12626764-12626844 Caenorhabditis elegans
Exon107471   108   III: 12626911-12627018 Caenorhabditis elegans
Exon107479   606   III: 12628701-12629306 Caenorhabditis elegans
Exon107496   306   III: 12630373-12630678 Caenorhabditis elegans
Exon107517   281   III: 12631927-12632207 Caenorhabditis elegans
Exon107533   73   III: 12634857-12634929 Caenorhabditis elegans
Exon107550   206   III: 12635548-12635753 Caenorhabditis elegans
Exon107558   60   III: 12635801-12635860 Caenorhabditis elegans
Exon107582   320   III: 12637489-12637808 Caenorhabditis elegans
Exon107599   1596   III: 12638881-12640476 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14s.1 12626568 12640476 1

1 Sequence

Length
3788

1 Sequence Ontology Term

Identifier Name Description
transcript