WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.14a.3 Sequence Name  Y111B2A.14a.3
Length (nt)  4407   Chromosome Location  III: 12626568-12651692
Chromosome . Primary Identifier  III Chromosome Location . Start  12626568
Chromosome Location . End  12651692 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.14a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14a Y111B2A.14a 4251   III: 12626575-12626718

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14a.3 12626568 12651692 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107453   151   III: 12626568-12626718 Caenorhabditis elegans
Exon107459   81   III: 12626764-12626844 Caenorhabditis elegans
Exon107467   108   III: 12626911-12627018 Caenorhabditis elegans
Exon107475   606   III: 12628701-12629306 Caenorhabditis elegans
Exon107488   306   III: 12630373-12630678 Caenorhabditis elegans
Exon107505   281   III: 12631927-12632207 Caenorhabditis elegans
Exon107521   73   III: 12634857-12634929 Caenorhabditis elegans
Exon107538   206   III: 12635548-12635753 Caenorhabditis elegans
Exon107562   51   III: 12635810-12635860 Caenorhabditis elegans
Exon107570   320   III: 12637489-12637808 Caenorhabditis elegans
Exon107586   206   III: 12638881-12639086 Caenorhabditis elegans
Exon107602   39   III: 12639647-12639685 Caenorhabditis elegans
Exon107617   117   III: 12641050-12641166 Caenorhabditis elegans
Exon107631   495   III: 12641820-12642314 Caenorhabditis elegans
Exon107655   126   III: 12644471-12644596 Caenorhabditis elegans
Exon107672   286   III: 12645025-12645310 Caenorhabditis elegans
Exon107689   273   III: 12645682-12645954 Caenorhabditis elegans
Exon107706   191   III: 12649659-12649849 Caenorhabditis elegans
Exon107724   143   III: 12650000-12650142 Caenorhabditis elegans
Exon107743   135   III: 12650194-12650328 Caenorhabditis elegans
Exon107775   131   III: 12651168-12651298 Caenorhabditis elegans
Exon107780   82   III: 12651611-12651692 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14a.3 12626568 12651692 1

1 Sequence

Length
4407

1 Sequence Ontology Term

Identifier Name Description
transcript