WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.14k.1 Sequence Name  Y111B2A.14k.1
Length (nt)  3192   Chromosome Location  III: 12630583-12651231
Chromosome . Primary Identifier  III Chromosome Location . Start  12630583
Chromosome Location . End  12651231 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.14k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14k Y111B2A.14k 3192   III: 12630583-12630678

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14k.1 12630583 12651231 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107549   96   III: 12630583-12630678 Caenorhabditis elegans
Exon107564   281   III: 12631927-12632207 Caenorhabditis elegans
Exon107580   73   III: 12634857-12634929 Caenorhabditis elegans
Exon107597   206   III: 12635548-12635753 Caenorhabditis elegans
Exon107615   51   III: 12635810-12635860 Caenorhabditis elegans
Exon107629   320   III: 12637489-12637808 Caenorhabditis elegans
Exon107645   206   III: 12638881-12639086 Caenorhabditis elegans
Exon107661   39   III: 12639647-12639685 Caenorhabditis elegans
Exon107676   117   III: 12641050-12641166 Caenorhabditis elegans
Exon107690   495   III: 12641820-12642314 Caenorhabditis elegans
Exon107700   90   III: 12643711-12643800 Caenorhabditis elegans
Exon107714   126   III: 12644471-12644596 Caenorhabditis elegans
Exon107731   286   III: 12645025-12645310 Caenorhabditis elegans
Exon107748   273   III: 12645682-12645954 Caenorhabditis elegans
Exon107765   191   III: 12649659-12649849 Caenorhabditis elegans
Exon107783   143   III: 12650000-12650142 Caenorhabditis elegans
Exon107802   135   III: 12650194-12650328 Caenorhabditis elegans
Exon107817   64   III: 12651168-12651231 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14k.1 12630583 12651231 1

1 Sequence

Length
3192

1 Sequence Ontology Term

Identifier Name Description
transcript