WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.4c.1 Sequence Name  Y38C1AB.4c.1
Length (nt)  4698   Chromosome Location  IV: 641-15415
Chromosome . Primary Identifier  IV Chromosome Location . Start  641
Chromosome Location . End  15415 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021406 frm-5.2 Y38C1AB.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.4c Y38C1AB.4c 4155   IV: 695-1065

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.4c.1 641 15415 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109870   425   IV: 641-1065 Caenorhabditis elegans
Exon109874   217   IV: 1285-1501 Caenorhabditis elegans
Exon109878   603   IV: 1625-2227 Caenorhabditis elegans
Exon109882   76   IV: 2698-2773 Caenorhabditis elegans
Exon109886   137   IV: 4909-5045 Caenorhabditis elegans
Exon109890   75   IV: 5146-5220 Caenorhabditis elegans
Exon109894   323   IV: 5462-5784 Caenorhabditis elegans
Exon109898   445   IV: 6259-6703 Caenorhabditis elegans
Exon109901   42   IV: 6994-7035 Caenorhabditis elegans
Exon109904   143   IV: 7312-7454 Caenorhabditis elegans
Exon109908   152   IV: 7705-7856 Caenorhabditis elegans
Exon109912   180   IV: 7951-8130 Caenorhabditis elegans
Exon109916   197   IV: 8352-8548 Caenorhabditis elegans
Exon109925   154   IV: 11268-11421 Caenorhabditis elegans
Exon109929   329   IV: 12469-12797 Caenorhabditis elegans
Exon109933   159   IV: 13185-13343 Caenorhabditis elegans
Exon109937   331   IV: 13704-14034 Caenorhabditis elegans
Exon109941   710   IV: 14706-15415 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.4c.1 641 15415 1

1 Sequence

Length
4698

1 Sequence Ontology Term

Identifier Name Description
transcript