WormMine: Gene WBGene00003362

• WormBase Gene ID: WBGene00003362
• Gene Name: mir-269
• Sequence Name: T21D12.13
• Brief Description: mir-269 encodes a microRNA, a small non-protein coding RNA;computational methods that compare RNA sequence indicate that mir-269 belongs to a cluster that includes mir-266, human mir-31 and C. elegans mir-72; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-269 is unknown.
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by alg-5 based on RNA-seq studies.
• Biotype: SO:0001265
• Genetic Position: IV :-26.6913 ±0.025983
• Length (nt): 94

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00003362

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T21D12.13a	T21D12.13a	20	IV: 273912-273931

Other

0 CDSs

0 RNAi Result

5 Allele

• gk963025
• gk963557
• gk963558
• gk963690
• n4641

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00003362
• Start: 273900
• End: 273993
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_273994..274419
• Length (nt): 426
• Chromosome Location: IV: 273994-274419
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Fungi infection: Fusarium oxysporum	Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours.	The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed.	WBPaper00053368:F.oxysporum_regulated
	MicroRNAs that showed significantly increased expression in alg-5(ram2), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(ram2)_upregulated_miRNA

2 Expression Patterns

• Primary Identifier: Expr8442
• Pattern: Expression detected in L4 to adult worms in head neurons.

• Primary Identifier: Expr10975

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00003362
• Start: 273900
• End: 273993
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 94

1 Sequence Ontology Term