WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F18F11.3e.1 Sequence Name  F18F11.3e.1
Length (nt)  4917   Chromosome Location  IV: 339808-358882
Chromosome . Primary Identifier  IV Chromosome Location . Start  339808
Chromosome Location . End  358882 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F18F11.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017576 cdh-8 F18F11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18F11.3e F18F11.3e 4917   IV: 339808-339868

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F18F11.3e.1 339808 358882 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110853   61   IV: 339808-339868 Caenorhabditis elegans
Exon110860   101   IV: 340335-340435 Caenorhabditis elegans
Exon110868   93   IV: 341136-341228 Caenorhabditis elegans
Exon110877   87   IV: 345173-345259 Caenorhabditis elegans
Exon110885   153   IV: 345645-345797 Caenorhabditis elegans
Exon110893   92   IV: 345847-345938 Caenorhabditis elegans
Exon110901   108   IV: 345985-346092 Caenorhabditis elegans
Exon110909   322   IV: 346822-347143 Caenorhabditis elegans
Exon110917   108   IV: 347195-347302 Caenorhabditis elegans
Exon110925   129   IV: 348814-348942 Caenorhabditis elegans
Exon110933   325   IV: 350578-350902 Caenorhabditis elegans
Exon110941   125   IV: 351591-351715 Caenorhabditis elegans
Exon110949   222   IV: 351761-351982 Caenorhabditis elegans
Exon110957   372   IV: 352778-353149 Caenorhabditis elegans
Exon110965   365   IV: 353962-354326 Caenorhabditis elegans
Exon110971   195   IV: 354412-354606 Caenorhabditis elegans
Exon110977   171   IV: 354656-354826 Caenorhabditis elegans
Exon110985   601   IV: 354870-355470 Caenorhabditis elegans
Exon110997   93   IV: 355936-356028 Caenorhabditis elegans
Exon111005   210   IV: 356285-356494 Caenorhabditis elegans
Exon111013   255   IV: 356545-356799 Caenorhabditis elegans
Exon111017   144   IV: 357352-357495 Caenorhabditis elegans
Exon111025   89   IV: 357541-357629 Caenorhabditis elegans
Exon111034   241   IV: 357731-357971 Caenorhabditis elegans
Exon111043   149   IV: 358550-358698 Caenorhabditis elegans
Exon111051   106   IV: 358777-358882 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F18F11.3e.1 339808 358882 1

1 Sequence

Length
4917

1 Sequence Ontology Term

Identifier Name Description
transcript