WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y66H1A.6a.1 Sequence Name  Y66H1A.6a.1
Length (nt)  3874   Chromosome Location  IV: 429211-440554
Chromosome . Primary Identifier  IV Chromosome Location . Start  429211
Chromosome Location . End  440554 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y66H1A.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002041 hum-8 Y66H1A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y66H1A.6a Y66H1A.6a 3798   IV: 429277-429398

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1A.6a.1 429211 440554 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111649   188   IV: 429211-429398 Caenorhabditis elegans
Exon111650   96   IV: 430513-430608 Caenorhabditis elegans
Exon111652   222   IV: 430651-430872 Caenorhabditis elegans
Exon111653   293   IV: 430932-431224 Caenorhabditis elegans
Exon111655   302   IV: 432629-432930 Caenorhabditis elegans
Exon111657   149   IV: 432981-433129 Caenorhabditis elegans
Exon111659   112   IV: 433177-433288 Caenorhabditis elegans
Exon111661   448   IV: 434125-434572 Caenorhabditis elegans
Exon111663   164   IV: 435285-435448 Caenorhabditis elegans
Exon111665   486   IV: 436482-436967 Caenorhabditis elegans
Exon111667   369   IV: 437989-438357 Caenorhabditis elegans
Exon111669   165   IV: 438431-438595 Caenorhabditis elegans
Exon111671   98   IV: 438639-438736 Caenorhabditis elegans
Exon111673   295   IV: 438791-439085 Caenorhabditis elegans
Exon111675   275   IV: 439450-439724 Caenorhabditis elegans
Exon111677   212   IV: 440343-440554 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1A.6a.1 429211 440554 -1

1 Sequence

Length
3874

1 Sequence Ontology Term

Identifier Name Description
transcript