WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A11.1.1 Sequence Name  F56A11.1.1
Length (nt)  4022   Chromosome Location  IV: 572769-583577
Chromosome . Primary Identifier  IV Chromosome Location . Start  572769
Chromosome Location . End  583577 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A11.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001579 gex-2 F56A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A11.1 F56A11.1 3789   IV: 572776-572820

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A11.1.1 572769 583577 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111854   52   IV: 572769-572820 Caenorhabditis elegans
Exon111855   71   IV: 572868-572938 Caenorhabditis elegans
Exon111856   91   IV: 572988-573078 Caenorhabditis elegans
Exon111857   180   IV: 573134-573313 Caenorhabditis elegans
Exon111858   182   IV: 576048-576229 Caenorhabditis elegans
Exon111859   121   IV: 576288-576408 Caenorhabditis elegans
Exon111860   319   IV: 576975-577293 Caenorhabditis elegans
Exon111861   2115   IV: 577536-579650 Caenorhabditis elegans
Exon111862   212   IV: 579863-580074 Caenorhabditis elegans
Exon111863   131   IV: 580138-580268 Caenorhabditis elegans
Exon111870   148   IV: 582335-582482 Caenorhabditis elegans
Exon111871   400   IV: 583178-583577 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A11.1.1 572769 583577 1

1 Sequence

Length
4022

1 Sequence Ontology Term

Identifier Name Description
transcript